Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smarca4

Cell type

Cell type Class
Others
Cell type
Tumor
NA
NA

Attributes by original data submitter

Sample

source_name
mouse tumor
genotype
TATcre;SS18-SSX+ and Snf5-/-
chip antibody
Brg1
strain
C57BL/6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei was isolated from snap frozen samples. Lysates were clarified from sonicated nuclei and BAF-DNA complexes were isolated with antibody. Library was prepared using NEBnext ChIP-seq libraray prep reagent set

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

mm10

Number of total reads
25705910
Reads aligned (%)
98.0
Duplicates removed (%)
24.4
Number of peaks
167 (qval < 1E-05)

mm9

Number of total reads
25705910
Reads aligned (%)
97.8
Duplicates removed (%)
25.3
Number of peaks
154 (qval < 1E-05)

Base call quality data from DBCLS SRA