Antigen

Antigen Class

TFs and others

Antigen

Smarca4

Cell type

Cell type Class

Others

Cell type

Tumor

NA

NA

Sample

source_name

mouse tumor

genotype

TATcre;SS18-SSX+ and Snf5-/-

chip antibody

Brg1

strain

C57BL/6

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Nuclei was isolated from snap frozen samples. Lysates were clarified from sonicated nuclei and BAF-DNA complexes were isolated with antibody. Library was prepared using NEBnext ChIP-seq libraray prep reagent set

Sequencing Platform

instrument_model

Illumina NovaSeq 6000

mm10

Number of total reads

25705910

Reads aligned (%)

98.0

Duplicates removed (%)

24.4

Number of peaks

167 (qval < 1E-05)

mm9

Number of total reads

25705910

Reads aligned (%)

97.8

Duplicates removed (%)

25.3

Number of peaks

154 (qval < 1E-05)